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Wow! Those are some crazy annotations and can see them in your public maps. Don't worry, all your work isn't lost. Some of those annotations are so big that you are probably getting pretty close to the size limit we allow which is probably 250-300 points. I don't thing there is an error that gets reported when you hit it either. We will add one. We never considered anyone ever adding that many points!
What browser are you using when you can't see them? Is it possible that you don't have the public annotations checkbox marked?
To change the state of the check boxes you have to uncheck the box, and then accept the change by clicking on the green check next to it. We know it is a little weird but it is the only way to do it inline without having to have the user submit a form and reload the whole map.