coordinate precision decreased

Maybe I didn’t ask the question properly. I transfer the photos I took during my flight with my unmanned aerial vehicle to Agisoft Metashape software and transfer the ground control points whose coordinates I determined with a GNSS signal receiver to Agisoft Metashape software. I am processing Agisoft Metashape software in the order of operations on the site Aerial data processing (with GCPs) - Orthomosaic&DEM generation : Helpdesk Portal. I check the amount of error that occurs as a result of adjustment. The amount of error I am talking about is the errors in the check points and ground control points in the adjustment reports I received after the transaction with Agisoft Metashape software.
The amount of error you mentioned is the general sensitivity values of the coordinates obtained by the GNSS signal receiver during the photo shooting of the unmanned aerial vehicle without RTK feature. I understand what you’re saying.
The change in the amount of error I get with the balancing processes I mentioned above. My work is not just comparing two flight results. I do multiple experiments in the same measuring area and in different measuring area. I can’t get the adjustment results that I had previously with the Agisoft Metashape software. I am using licensed Agisoft Metashape software. Thank you for your reply. Maybe I explained myself better.