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Map Pilot flights are all done under DJI waypoint flight control. As long as you have it set to return to home in DJI Go, that is what will happen. The active part of the Map Pilot connection is only for taking images since setting a timer isn't a great way to take data. We are a weird case of being a hybrid between automated flight and actively managed imaging. Rest assured, your aircraft will continue along the prescribed path until a low battery is detected or the mission completes, connected or not.
While the flight control itself is done onboard the aircraft since it has been programmed, the imaging signal comes from the mobile device and will not be available in the event of a signal loss. This will cause images to be missed.
Please refer to the following articles:
http://support.dronesmadeeasy.com/hc/en-us/articles/205887566-Line-of-Sight-Indicator-and-Signal-Strength