Offizieller Kommentar
For a full 3D model to come out well, more data has to be collected. It appears all of your data was taken from directly above and lacks the detail required to correctly reconstruct the scene.
In order to get the detail you need, images need to be taken from some other directions. One way of doing this is by using our app and adjusting the camera pointing up about 20 degrees from it's straight down position. To make sure you have enough detail for all sides of structures, this should then be repeated with a mission for the same area that is rotated 90 degrees so it will form a criss-crossed flight pattern.
These instructions have helped a lot of people make some pretty nice 3D models.
We plan on adding a 3D capture setting to the Map Pilot app.