We are only getting those 45 images to process so that is all that can be included. We received 45 files from you and 45 files were included in the outputs.
The first image is what is shown as files are inspected by the uploader. All of the images that get uploaded must have unique file names even if they are in two different folders. If you have two sets of images that are named DJI_001.JPG through DJI_045.JPG we are only going to get one set.
If that is not the case, please pay special attention to the upload process to see that all of the images are getting uploaded properly.
I would recommend CAREFULLY putting all of your images into one folder to make sure they are being selected properly and that the names are right.