
The GeoTiff is georeferenced. That is the main output. It is what the web map tiles get generated from.
There is the Classic workflow and the DJI workflow. They are just different ways of uploading the data to us for processing. The processing itself is the same. The DJI workflow has more settings and is able to be used with subscriptions since it checks the tags first to make sure they are OK before doing the processing.
The Manual Realignment is an additional step that can be done after the fact using a CSV file of ground control points.