Official comment
Being that Map Pilot never actually touches the image files themselves we do not have the opportunity to do this.
We have addressed this image for our own processing service but there is nothing stopping anyone from manually recording a reference point at the takeoff location and modifying their own tags according to that reference. What you are describing is basically what we are doing in the Maps Made Easy backend except we get the number from SRTM data.
Writing a script to do this would likely be trivial.